387-Pertpy: Framework for Single-Cell Perturbation Analysis
Pertpy is a Python-based software framework created to streamline the analysis of large-scale single-cell perturbation experiments, such as genetic modifications or drug treatments. By integrating with the scverse ecosystem, it offers a modular suite of tools for metadata annotation, quality control, and the calculation of specialized perturbation spaces. The platform enhances efficiency through GPU acceleration and provides a unified structure for identifying differential gene expression and shifts in cell type composition. Researchers can use Pertpy to deconvolve complex biological…
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